3D Antibody Modeling 

AMA-I

 

  Aligned All FR FR Can L H FRH L H
Name rmsd All FR LOOPS Can L H H3 H L Scale
C705 ACC 1.4 0.9 2.4 1.0 0.8 1.5 4.2 2.0 2.2 0.0
CCG 1.3 1.0 2.0 1.0 0.6 1.2 3.1 2.2 1.6 0.5
PIGS 1.4 1.0 2.4 0.9 0.8 1.4 3.9 2.0 2.5 1.0
  ROS - - - - - - - - - 1.5
X836 ACC 1.3 1.1 1.9 1.1 0.7 1.2 2.8 2.4 2.0 2.0
CCG 1.6 0.9 3.0 1.2 0.4 1.8 5.6 2.9 2.3 2.5
PIGS 1.1 0.8 1.8 0.6 0.3 1.4 3.5 1.5 1.0 3.0
  ROS 1.8 1.4 2.9 2.1 0.4 1.5 3.5 4.3 2.7 3.5
101F ACC 0.9 0.7 1.6 0.7 0.6 0.9 2.6 1.3 1.9 4.0
CCG 0.9 0.7 1.5 0.9 0.5 0.9 3.0 1.8 1.3 4.5
PIGS 1.0 0.8 1.7 1.2 0.6 1.0 2.9 1.9 1.6 5.0
  ROS 1.1 1.0 1.6 0.9 0.7 0.8 1.8 2.5 1.9 5.5
B21M ACC 1.1 0.8 1.9 0.9 0.7 1.3 3.3 1.9 1.2 6.0
CCG 0.9 0.6 1.5 0.9 0.6 0.8 2.4 1.7 1.4
PIGS 1.0 0.7 1.7 1.1 0.6 1.0 2.9 1.4 1.2
  ROS 1.4 1.1 2.4 1.3 0.6 1.1 3.1 2.6 2.7
C1068 ACC 1.0 1.0 1.2 0.7 0.7 0.9 1.6 1.9 2.3
CCG 1.5 0.7 3.1 0.8 0.7 1.7 5.7 2.2 2.2
PIGS 1.1 0.8 1.8 0.8 0.6 1.3 3.7 1.4 1.1
  ROS 1.0 0.8 1.5 0.8 0.6 0.9 2.4 1.5 1.8
C706 ACC 1.4 1.0 2.5 2.3 1.5 1.0 2.2 1.4 2.3
CCG 2.3 2.1 3.3 1.9 1.4 1.2 3.3 5.8 4.7
PIGS 1.3 1.0 2.4 2.2 1.2 1.0 2.6 3.2 1.7
  ROS 1.2 0.9 2.2 2.1 1.3 0.9 1.9 2.0 1.8
2507 ACC 1.9 1.6 2.8 1.3 1.1 1.7 4.6 3.0 3.8
CCG 1.2 0.9 2.0 1.1 0.7 1.3 3.1 1.9 1.6
PIGS 1.2 0.8 2.4 1.0 0.7 1.5 4.2 1.6 1.1
  ROS 1.7 1.3 3.0 1.8 0.7 1.7 4.9 3.1 2.3
323/B3 ACC 1.1 0.7 2.2 1.5 0.8 1.4 3.1 1.6 0.9
CCG 1.1 0.7 2.0 1.3 0.7 1.2 2.9 1.7 1.3
PIGS 1.0 0.6 1.8 1.4 0.9 0.8 2.2 1.5 1.5
  ROS 1.0 0.6 2.0 1.4 0.7 1.1 3.0 1.3 1.6
169/B3 ACC 1.3 1.0 2.2 1.3 1.0 1.3 2.9 2.0 1.8
CCG 1.3 0.8 2.3 1.4 0.6 1.4 3.1 2.4 2.1
PIGS 1.0 0.8 1.5 0.9 0.4 1.1 2.7 1.5 1.1
  ROS 1.4 0.7 2.8 1.4 0.7 1.8 5.5 1.9 1.4

 

 

AMA-II

 

  Aligned All FR FR Can L H FRH L H
Name rmsd All FR LOOPS Can L H H3 H L Scale
Ab01 ACC 1.8 0.8 3.7 3.3 1.9 1.5 5.0 2.0 2.4 0.0
CCG 1.7 0.8 3.6 2.7 1.4 1.5 5.1 2.6 2.6 0.5
JEF 1.9 1.0 3.8 2.8 1.8 1.7 5.7 2.2 2.9 1.0
JOA 1.7 0.8 3.7 2.8 1.7 1.7 5.8 2.1 2.3 1.5
MMT 2.5 1.4 5.1 4.7 3.0 1.6 4.8 3.6 3.5 2.0
SCH 1.7 0.9 3.6 2.8 1.8 1.6 5.0 1.9 2.1 2.5
PIG - - - - - - - - - 3.0
Ab02 ACC 1.2 0.8 2.3 1.0 0.6 1.4 4.5 1.9 1.7 3.5
CCG 1.3 0.8 2.5 1.0 0.8 1.5 4.8 1.8 1.9 4.0
JEF 1.1 0.8 1.8 0.9 0.5 1.2 3.5 2.3 1.2 4.5
JOA 1.3 1.0 2.0 1.3 0.5 1.1 3.4 3.2 2.4 5.0
MMT 1.6 1.4 2.2 1.7 0.8 1.4 3.0 3.0 3.5 5.5
SCH 1.0 0.8 1.4 0.9 0.7 0.9 2.4 1.4 1.5 6.0
PIG 1.2 0.7 2.3 0.9 0.5 1.5 4.7 1.8 1.3
Ab03 ACC 1.0 0.8 1.6 1.3 0.5 1.0 1.8 1.5 2.1
CCG 1.6 1.3 2.6 1.4 0.8 1.3 4.0 3.1 4.3
JEF 1.2 0.9 2.3 2.0 0.5 1.2 2.4 2.9 2.4
JOA 1.0 0.9 1.5 1.1 0.4 1.2 2.2 1.7 1.2
MMT 1.7 1.6 2.1 1.4 1.3 1.3 2.0 3.2 3.7
SCH 1.0 0.6 1.9 1.8 0.5 1.1 1.6 1.6 1.6
PIG 4.7 4.6 5.1 3.9 0.5 6.4 6.6 6.9 3.9
Ab04 ACC 1.3 1.2 1.5 1.3 0.7 1.1 1.6 2.4 2.5
CCG 1.2 1.1 1.3 1.1 0.8 1.1 2.1 2.4 1.8
JEF 1.0 1.0 1.0 0.8 0.7 1.1 1.6 1.6 1.3
JOA 1.1 1.1 1.2 0.9 0.6 1.2 1.8 1.9 1.6
MMT 1.2 1.1 1.5 1.1 0.7 1.0 1.7 3.0 2.4
SCH 1.3 1.2 1.8 1.1 0.8 1.4 3.5 2.3 2.0
PIG 0.9 0.9 0.8 0.5 0.6 1.1 1.5 1.4 0.9
Ab05 ACC 1.7 1.4 2.5 2.1 1.4 1.1 3.2 2.7 3.0
CCG 1.1 0.9 1.7 1.4 0.9 0.9 3.3 1.5 1.9
JEF 1.1 0.9 1.8 1.4 1.0 0.8 2.9 1.8 2.0
JOA 1.3 1.2 1.7 1.4 1.4 0.9 2.8 1.4 2.2
SCH 1.2 0.9 1.9 1.7 1.1 0.9 2.1 1.5 2.3
MMT 1.4 1.1 2.1 1.4 1.0 1.2 3.4 2.2 2.6
PIG - - - - - - - - -
Ab06 ACC 1.2 0.7 2.3 0.7 0.4 1.5 4.4 1.8 1.2
CCG 1.1 0.7 2.2 0.8 0.5 1.4 4.0 1.6 0.8
JEF 1.4 0.8 2.6 0.9 0.5 1.4 3.9 2.3 1.8
JOA 1.2 1.0 1.8 1.1 0.4 0.9 2.3 2.5 1.9
MMT 1.3 1.1 1.9 0.7 1.2 1.2 3.0 1.8 1.9
SCH 1.1 0.7 2.0 0.9 0.5 1.2 3.1 1.9 1.4
PIG 1.1 0.7 2.0 0.8 0.5 1.3 3.9 1.8 1.1
Ab07 ACC 0.9 0.6 1.5 0.8 0.5 0.8 2.7 2.2 1.3
CCG 1.0 0.8 1.7 1.0 0.9 1.0 3.1 1.5 1.1
JEF 0.7 0.6 1.1 1.0 0.4 0.6 1.3 1.5 1.2
JOA 0.6 0.4 1.1 1.0 0.7 0.5 1.0 0.8 1.1
MMT 0.9 0.8 1.3 0.9 0.6 0.8 2.1 2.0 1.6
SCH 0.8 0.6 1.5 1.3 0.7 0.8 2.0 1.7 1.0
PIG 1.3 1.0 2.2 1.9 1.4 1.1 3.0 1.9 1.7
Ab08 ACC 1.0 0.5 1.9 0.7 0.4 1.3 3.8 1.4 0.6
CCG 1.1 0.8 1.9 1.0 0.7 1.1 3.2 1.7 1.9
JEF 1.1 1.0 1.6 0.7 0.5 1.0 2.9 2.0 2.8
JOA 0.9 0.7 1.6 0.8 0.6 1.0 2.4 1.3 1.8
MMT 1.5 1.1 2.7 1.4 1.2 1.3 3.9 1.9 3.4
SCH 1.1 0.7 1.9 0.6 0.5 1.4 4.0 1.4 0.8
PIG 1.2 0.9 2.2 1.0 0.7 1.3 3.4 1.9 2.4
Ab09 ACC 0.7 0.4 1.3 0.5 0.3 0.8 2.6 1.1 0.5
CCG 0.6 0.5 1.0 0.7 0.6 0.6 1.5 0.7 0.8
JEF 0.7 0.6 1.1 0.7 0.4 0.6 1.8 1.4 1.1
JOA 0.7 0.5 1.2 0.7 0.4 0.8 2.0 1.2 1.0
MMT 1.4 0.9 2.7 1.2 0.6 1.7 5.1 2.1 2.3
SCH 0.7 0.6 1.2 0.6 0.5 0.8 2.5 1.2 0.8
PIG 1.2 1.1 1.6 0.9 0.7 1.3 2.1 2.1 2.0
Ab010 ACC 1.0 0.9 1.3 0.8 0.5 0.8 1.8 1.5 2.1
CCG 1.1 0.8 2.1 0.8 0.6 1.2 3.6 1.6 2.3
JEF 1.1 0.9 1.7 1.5 0.6 1.1 2.1 2.0 1.6
JOA 0.9 0.6 1.5 1.0 0.7 0.9 2.5 1.2 1.3
MMT 1.4 1.2 2.2 1.1 0.8 1.2 3.0 2.4 3.9
SCH 1.0 0.7 2.0 1.2 0.8 0.9 2.4 1.4 2.8
PIG 1.2 0.7 2.4 1.0 0.6 1.2 3.7 1.9 2.4
Ab011 ACC 1.6 1.3 2.4 1.7 0.5 1.5 3.3 4.2 3.2
CCG 1.2 0.9 1.9 1.2 0.6 1.4 3.5 2.3 1.9
JEF 1.1 0.7 2.1 1.1 0.4 1.2 3.2 2.0 1.3
JOA 1.0 0.8 1.4 0.8 0.5 1.0 2.2 2.1 1.2
MMT 1.3 1.1 2.1 1.1 0.6 1.3 3.0 2.2 2.2
SCH 1.2 0.9 2.0 1.1 0.6 1.2 3.3 2.4 1.7
  PIG 1.1 0.9 1.6 0.8 0.4 0.9 2.2 2.4 1.6